clustvarsel: A Package Implementing Variable Selection for Model-based Clustering in R

Tech Report Number
629

 

Abstract

Finite mixture modelling provides a framework for cluster analysis based on parsimonious Gaussian mixture models. Variable or feature selection is of particular importance in situations where only a subset of the available variables provide clustering information. This enables the selection of a more parsimonious model, yielding more efficient estimates, a clearer interpretation and, often, improved clustering partitions. This paper describes the R package clustvarsel which performs subset selection for model-based clustering. An improved version of the methodology of Raftery and Dean (2006) is implemented in the new version 2 of the package to find the (locally) optimal subset of variables with group/cluster information in a dataset. Search over the solution space is performed using either a stepwise greedy search or a headlong algorithm. Adjustments for speeding up these algorithms are discussed, as well as a parallel implementation of the stepwise search. Usage of the package is presented through the discussion of several data examples.

Keywords: model-based clustering, BIC, subset selection, R.

 

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